Sequence Data:
- University of California, Santa Cruz, Genome Bioinformatics downloads
- National Center for Biotechnology Information, FTP site
- The Ensembl FTP Server
Books:
- The Origins of Genome Architecture, genomes over time, very cool.
- The Implicit Genome, my favorite book of 2010 (its actually from 2006, I just found it last year. For some reason, when I went to Amazon to get link, the paperback and kindle editions seem to only cost $2 now on Amazon, but hard cover is $140)
- The Evolution of the Genome
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